rs33527413 SNP Detail

Summary

• ID
  rs33527413
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:86234184 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACATGAA ATGAAAAGGA
  AGTTAGTGGA CTGTGGGGTA GATAAGGAAG GTTACCCTGG TGGAAGGAAC TGTTTATGAT
  ACATTATAAT ACACATTTGT TTGTGTGTGT GTGTCTATAT ATACATATGT ATGAAATTGT
  CAAAAACTTA AATTATCAAA AAAGGGAAAG ATAGTCCTAA TGTCCAGACT TATGAGCTCC
  S
  TTTGATGAAG TACGATATCC ACCCTCTAGC CTGGTATCTG AGAGAACAGT CAAGTAAGAG
  AGGATCCTCA CACTGTTAGG ACTTAAAAGC AGAGTAACAA AAGCAATATA TAAGATTACT
  CACCTAGCAT TATCTAAGTC CACAGCAAAT AAGTAAGAGT GTAATTGATG TCCTGAGGAG
  AAAACCCTAC TGTTCTGTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39546697	mCV24492376	ABI	CRAMUS_MOUSE	f	SNP		C	C					G
ss60286297	NES15785415	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	G	C	G	G	G	G	C	C	G	C
ss146155827	ENSMUSSNP1909230	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33527413					SNP	G	C	C	C	C	G	C	G	G	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60286297	NES15785415	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:86234184 () rs orientation: forward

Symbol	Name	Function Class
Gm30117	predicted gene, 30117	within coordinates
Rr532331	regulatory region 532331	1548 bp proximal
Rr532332	regulatory region 532332	1780 bp proximal
Tssr149724	transcription start site region 149724	1807 bp downstream