rs33527495 SNP Detail

Summary

• ID
  rs33527495
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89849040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTACCAAC CTGAATCCCC
  TGGCCTCCAC ATTTTAAGTG CTTCTCCATG CCCACCCTGC TGTCCCCGTA TCCCTACTGG
  AAGTAGCACA TATAATCCAA GTACTATTAC AGTAACTAGG ACAGATCTGA GGACTAAATG
  ACGCCATGGT GCCAAAGTAG TCTTATTTGC ACTGCGGTGA TGAAACAGAA ATTTGAAGGA
  M
  AAAGGGTCTT TATTTGGCTT ACAGGTTACA CTCTCTTATC AAGGGGAGCT GAGGCAGGAA
  CTGACCCAGA GACCATGGAG GAACACTGTT TACCGATTTG TTCCCCCTGG CTTGCTCAAT
  TACCTTTCAT AGATAGCCCA GACCCACCAG CCCAGGGGGA GGGGGCGGGG CACTGCATAC
  AGTGAGCTGG GCCACTCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48323563	NES12195569	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33527495					SNP	C	C	C	C	C	C	A	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48323563	NES12195569	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89849040 () rs orientation: forward

Symbol	Name	Function Class
Tiam1	T cell lymphoma invasion and metastasis 1	within coordinates
Tssr142014	transcription start site region 142014	212 bp downstream