rs33527513 SNP Detail

Summary

• ID
  rs33527513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103473286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTCAAGC TTCAACCATA
  CAACACAGCA CCGCACCAGC ACCCCTGAAA GCAAGTTTTG CATCCTCACA GGTGTCTGTG
  GCAATTGTCT CCTGGGACCT GGCTTGCTTT ATGTTGACCC CAACCTGTAT GTGCCTCACT
  TTCTGGGTCT ATACCTGGAG CACTGGGTGC TGTTTCTGGT CCCCAAGAGC TGTTAGCATT
  Y
  GTCCTCCTGG TATAGCATGG GGCACCACTT GGCGGTTGCT GGAGAGCTTG TAGCAAACTC
  CAGGAGCCAT CTTCCTGTGG TCCAGTTGGT ACTTTGAGGA CTCAGCTCCA GTGCCAACCT
  AGTGGCTCAT CACTCACTGG GGGCTGGAAC CAGGAAAGGT CTGAAGTCAC AGAACCTGAT
  CTTTCTGGTC AGAAATATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46824293	NES10726853	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	C	T	T	T		C	C	C		C
ss320857579	CHEV_3_103369893	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33527513					SNP	T	C	T	C	T	C	C	T	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46824293	NES10726853	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103473286 () rs orientation: forward

Symbol	Name	Function Class
Rr69865	regulatory region 69865	1715 bp proximal