rs33529305 SNP Detail

Summary

• ID
  rs33529305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27584833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT CAGGAGTGCT GGGGACCAGC
  Y
  GAGCAGCAAT GTGCCTTTAT TAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss39547063	mCV25266132	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss48359922	NES12222242	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T		T	T	C	T		T	T		T
ss145411829	ENSMUSSNP5611901	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss325346733	CHEV_17_27502804	CHEVERUD	SCREENING_POP	f	SNP													C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33529305					SNP	T	T	T	C	T	C	T	C	T	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48359922	NES12222242	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27584833 () rs orientation: forward

Symbol	Name	Function Class
Gm49794	predicted gene, 49794	within coordinates
Rr330083	regulatory region 330083	368 bp proximal
Rr337134	regulatory region 337134	228 bp proximal
Tssr147021	transcription start site region 147021	1372 bp upstream