rs33529617 SNP Detail

Summary

• ID
  rs33529617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:122878552 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGGATG AATAGATGGA
  TGGGTGGATA GATAGATGAA TGGATGGGTA GATGGATGGA TACATGGATG GATGGATGGA
  TGGATGGATG GATGGATGGA TGGTGGATAG ATGGTTATAA AGTGGTCACA AAAGGGTCAA
  AGAAGCTGCA GCAGAATCCA AGGAGTGTGA GGAGACCTGA GAGGCAAAGG AAGTGGCATA
  R
  AGATCTGTAT CGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGCACT AACCTTGATA TAGGTATTCG
  AAAGTGCTGC AGAATACAGC TGTGAGATTA CAGGTTTTAT CCAAGACTCA TGGTCAAGCC
  AAGCTGTGGA AATGAAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47809551	NES11983270	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33529617					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47809551	NES11983270	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122878552 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tgm4	transglutaminase 4 (prostate)			Intron
				Noncoding-Transcript-Variant
Tssr87883	transcription start site region 87883			62 bp downstream
Tssr87884	transcription start site region 87884			1697 bp upstream
Tssr87885	transcription start site region 87885			1839 bp upstream
Tssr92118	transcription start site region 92118			1936 bp downstream