rs33529623 SNP Detail

Summary

• ID
  rs33529623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:122879225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGTACGC TGATCCCTTT
  TGATTGCTAG GCATGTCCTG TACCAGTCTG TGCCTGCTAA AACATCATCC TGCCTCTGCA
  TTTGAACCCT GGAGTCAAGT GCTGCTTGTA AAATGGAAGT CCCCAGGGCA AGGCACAGCC
  TACAAAACCA CCATTTCACA AATATGGAAG AGCTTAGGCA GGGCTTCCCG AGTGCAATAA
  Y
  CGTGTCCCAG GATCTTTGCT GCTGATGGTC AGCCATTGTC TACTGTATCC AAGGCAGCAG
  TCCTCAAACC CTGCGGTCAG GACATCAAGA CACTGTTAAA AGGTACCAAG GACCCCAAGT
  AGCTTATGTT TATATGGCTT ATGTCTACAA ATGTGTAGAA GTTATACCTT ATGATTATAC
  TTATAATATG AATATTTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47809557	NES11983243	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33529623					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47809557	NES11983243	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122879225 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tgm4	transglutaminase 4 (prostate)			Intron
				Noncoding-Transcript-Variant
Tssr87883	transcription start site region 87883			735 bp downstream
Tssr87884	transcription start site region 87884			1024 bp upstream
Tssr87885	transcription start site region 87885			1166 bp upstream
Tssr92118	transcription start site region 92118			1263 bp downstream