rs33529710 SNP Detail

Summary

• ID
  rs33529710
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93642389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACC ATGAAGCAAT GAGTACAAAC
  Y
  GGCCCAGCCT GAAACAGCGC CACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45289529	mCV23861644	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146948910	ENSMUSSNP7179851	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss320397097	CHEV_2_93652201	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33529710					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93642389 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11950	CpG island 11950			1426 bp proximal
Ext2	exostosin glycosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr561281	regulatory region 561281			1794 bp distal
Rr561282	regulatory region 561282			1914 bp distal
Rr561283	regulatory region 561283			1869 bp distal
Rr561284	regulatory region 561284			14 bp proximal
Rr561285	regulatory region 561285			1333 bp proximal
Rr561286	regulatory region 561286			1503 bp proximal