rs33529773 SNP Detail

Summary

• ID
  rs33529773
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23896896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTTATGTT TGCTTGCTTT GTTTGGATTT GGGGGTGGGG
  GGGACCAACA AAATCTCATA CTCTATCCCA GAGTAGCCTC GAATTTGAAA CATTCTGTCT
  Y
  ATCTCAGCCT CTCAAGTGCT AGGATTGTAG GCAGGAACCA CCACACCGAT TTTCTTTGGT
  TTGGTTTAGT TTTTTAGCTG CATAGCTTAG GCTGATCTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39547349	mCV24340428	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss145330334	ENSMUSSNP71650	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss325326759	CHEV_17_23814889	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33529773					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23896896 () rs orientation: forward

Symbol	Name	Function Class
Cldn6	claudin 6	1449 bp upstream
Cpgi8683	CpG island 8683	294 bp distal
Cpgi8684	CpG island 8684	1370 bp proximal
Rr523106	regulatory region 523106	1637 bp distal
Rr523107	regulatory region 523107	within coordinates
Rr523108	regulatory region 523108	994 bp proximal
Rr523109	regulatory region 523109	1748 bp proximal
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	473 bp upstream
Tssr142943	transcription start site region 142943	1441 bp upstream
Tssr142944	transcription start site region 142944	1750 bp upstream
Tssr142945	transcription start site region 142945	1815 bp upstream
Tssr146639	transcription start site region 146639	1339 bp upstream
Tssr146640	transcription start site region 146640	1293 bp upstream
Tssr146641	transcription start site region 146641	1276 bp upstream
Tssr146642	transcription start site region 146642	1238 bp upstream
Tssr146643	transcription start site region 146643	466 bp upstream
Tssr146644	transcription start site region 146644	438 bp upstream