rs33530283 SNP Detail

Summary

• ID
  rs33530283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90725262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGG GCTGATGACT GAGGAGCCCG
  Y
  TCTGCACCAG CCTAGGTGCA GATTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45289917	mCV22687932	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss146921257	ENSMUSSNP300260	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320391446	CHEV_2_90735075	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33530283					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90725262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32514	predicted gene, 32514			1720 bp upstream
Ndufs3	NADH:ubiquinone oxidoreductase core subunit S3			Intron
				Noncoding-Transcript-Variant
Rr560592	regulatory region 560592			293 bp distal
Tssr25138	transcription start site region 25138			423 bp downstream