rs33530431 SNP Detail

Summary

• ID
  rs33530431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114160827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGACCCTAG AAATCTTAGG AATCACAGCT AGACATGATC
  CTACCTTCCA AACCTAGACC ACCCTTCGTT CAACCCCCTT TCAGACACTG TGTTTTTAAA
  R
  TCTCAAGTCA GTGACAAACA TCCTTTCATA TTTAGGTTCA TGAATTCTTG CTTTCTTATT
  AGCAAGTCTA CACTGTTCCT AGTTTTGTTC TCTTATCCCA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47309472	NES11396318	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs33530431					SNP	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47309472	NES11396318	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114160827 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv3-3	immunoglobulin heavy variable V3-3	332 bp upstream
Tssr118065	transcription start site region 118065	270 bp upstream