rs33530435 SNP Detail

Summary

• ID
  rs33530435
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:122880601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGTGGGT ATCCCAGCTC
  GAAGCGTGAC TAACTTTGAG TCAGCCCATG ATACAGAAAA GAACCTCACA GTAGACATCT
  ACCTGGATGA ATCGGGCAAG ACAATTCCAC ATCTGACCAA AGACTCTGTC TGGTAGGCTC
  CCTCCAGGTG GTCTCTTCTG TTCTCTTCTG TTCTGTTCTG TGGGCCTTGA AGCTTCTCTG
  Y
  AGACTGGTTC AAATTGTGAG CAGTATCAAC ACCAGAAACC CACTTTGCAT AGTCAGCCTC
  ATAGTGTGAC CCATAAGTCC TGAGAAGGCT TGTTAAACAT AAATATCCCT GGAGGCAAAG
  GCCAAGAATT GGTATTTACT TCTGGCCCCC AGCCCTAGGG ACTGAGACAG GTTGCTGTGT
  GTCACACTCT GAGGTAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47809559	NES11983202	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33530435					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47809559	NES11983202	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122880601 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tgm4	transglutaminase 4 (prostate)			Intron
				Noncoding-Transcript-Variant
Tssr87884	transcription start site region 87884			332 bp downstream
Tssr87885	transcription start site region 87885			189 bp downstream
Tssr87886	transcription start site region 87886			1199 bp upstream
Tssr92118	transcription start site region 92118			91 bp upstream