rs33530443 SNP Detail

Summary

• ID
  rs33530443
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:122881559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACCAAA CCAAACCAAA
  CCAAAAAAAC CCAGGCAAAC AAGCAAGAAT ATGGAATATT GTCCAGACAC AAAACTATTC
  ATGAATTAAA TCAGAATCCT GAGGGGGAAA GAATTTACAG TTGTTTGCTC ATTTGTTCAT
  TCATTCACTC ATTCATTCAT CTGGCAGAGG ATTAATAATT GTTCTCTTGA CTCTTTGGGT
  S
  TGAGGAGTTT CTCCCTACTG CCCGCCTTCT CTAAGCTCTG CTTTCCACAA AGTACTCAGA
  ATTGTCCTTG CCTCTGTTGA CAAGGGTTCC CACCTCTTCA GAACAACCTT AGAGGGCTAT
  GATGGCAGGT TCTCTAACTA CATGGCTGGC TCTGGTGAGG CTGTTTCTCC TGCCACAGGA
  ATTTCCACGT GTGGACAGAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47809567	NES11983178	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33530443					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47809567	NES11983178	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122881559 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tgm4	transglutaminase 4 (prostate)			Intron
				Noncoding-Transcript-Variant
Tssr87884	transcription start site region 87884			1290 bp downstream
Tssr87885	transcription start site region 87885			1147 bp downstream
Tssr87886	transcription start site region 87886			241 bp upstream
Tssr92118	transcription start site region 92118			1049 bp upstream