rs33530800 SNP Detail

Summary

• ID
  rs33530800
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25402652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG GTTTACAGAT CAAGAATAAA
  W
  TCGGAGTGAT AATCATTATT GAGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39546901	mCV22798318	ABI	CRAMUS_MOUSE	f	SNP		T	T					A		T
ss48356116	NES12248647	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	T		A	T	A	A		T
ss145380179	ENSMUSSNP6882415	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss325336542	CHEV_17_25320623	CHEVERUD	SCREENING_POP	f	SNP												T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33530800					SNP	T	T	T	T	T	T	T	A	T	T	T	T	A	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48356116	NES12248647	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25402652 () rs orientation: forward

Symbol	Name	Function Class
4930568E02Rik	RIKEN cDNA 4930568E02 gene	within coordinates
Cpgi8755	CpG island 8755	325 bp proximal
Rr370183	regulatory region 370183	662 bp upstream
Rr523507	regulatory region 523507	154 bp distal
Rr523508	regulatory region 523508	250 bp distal
Rr523509	regulatory region 523509	386 bp proximal
Tssr5037	transcription start site region 5037	880 bp upstream
Tssr143142	transcription start site region 143142	886 bp upstream
Tssr143143	transcription start site region 143143	932 bp upstream
Tssr146818	transcription start site region 146818	704 bp downstream
Tssr146819	transcription start site region 146819	726 bp downstream
Uqcc4	ubiquinol-cytochrome c reductase complex assembly factor 4	883 bp upstream