rs33531815 SNP Detail

Summary

• ID
  rs33531815
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164908019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACCC TGAAAGCAGA GCTTCTTAAC
  R
  GGGACCAGTT TGGCTCTCTG TGGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45289546	mCV23187158	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss148234659	ENSMUSSNP2769280	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33531815					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164908019 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Tssr21708	transcription start site region 21708	1936 bp downstream
Tssr21709	transcription start site region 21709	1894 bp downstream
Tssr21710	transcription start site region 21710	1160 bp downstream
Tssr21711	transcription start site region 21711	1097 bp downstream
Tssr21712	transcription start site region 21712	1074 bp downstream
Tssr21713	transcription start site region 21713	380 bp downstream
Tssr21714	transcription start site region 21714	560 bp upstream
Tssr21715	transcription start site region 21715	606 bp upstream
Tssr21716	transcription start site region 21716	660 bp upstream
Tssr21717	transcription start site region 21717	747 bp upstream
Tssr21718	transcription start site region 21718	793 bp upstream
Tssr21719	transcription start site region 21719	884 bp upstream
Tssr21720	transcription start site region 21720	1087 bp upstream
Tssr21721	transcription start site region 21721	1130 bp upstream
Tssr21722	transcription start site region 21722	2000 bp upstream
Tssr27603	transcription start site region 27603	715 bp upstream