rs33532463 SNP Detail

Summary

• ID
  rs33532463
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84823386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCTGACCC CCGTAACTAT TGTGATTAGT GAGTGCCGCT
  TGAGCGGAGT CAGTAACTTG TTGGGTTTTT TTCCAACCAT CATGGCCTTA TCCGTCCCCG
  W
  TTTCTCAGTG TCTTCAATCT GTGATAGATG TTTATGGAGA AAAAGCAAAT CTGGCCTATT
  GTATAGAAAT CCCTATTTTG TGTGCTCCGC GTGCTCCAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46287710	mCV23392725	ABI	CRAMUS_MOUSE	f	SNP		T						A		T
ss60642566	NES16272404	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	A	T		A	T	T	T		T
ss145371889	ENSMUSSNP4893233	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								T
ss322747565	CHEV_8_86620656	CHEVERUD	SCREENING_POP	f	SNP													T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33532463					SNP	T	T	T	T	T	T	T	A	T	T	A	T	T	A	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60642566	NES16272404	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84823386 () rs orientation: forward

Symbol	Name	Function Class
Dcaf15	DDB1 and CUL4 associated factor 15	315 bp downstream
Gm39210	predicted gene, 39210	1283 bp upstream
Rfx1	regulatory factor X, 1 (influences HLA class II expression)	within coordinates