rs33533861 SNP Detail

Summary

• ID
  rs33533861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164796249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATCA AGGTCCTCCA TCCCTTAAGG
  Y
  CTTCGGGCCC GTTGTCCCCT ATTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45290314	mCV23741125	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss148233772	ENSMUSSNP3905323	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320607228	CHEV_2_164779829	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33533861					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164796249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12681	CpG island 12681	668 bp distal
Mmp9	matrix metallopeptidase 9	Intron
Rr569777	regulatory region 569777	1685 bp distal
Rr569778	regulatory region 569778	878 bp distal
Rr569779	regulatory region 569779	1560 bp proximal
Tssr21693	transcription start site region 21693	1895 bp downstream