rs33534193 SNP Detail

Summary

• ID
  rs33534193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:67423297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAA CCCAGGTTTA GTCCACAGCA
  Y
  TCAAAATGGG AACCTTACAA CTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J	LG/J	SM/J
ss45289877	mCV25076481	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss146721239	ENSMUSSNP5108829	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320326845	CHEV_2_67431010	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J	LG/J	SM/J
rs33534193					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:67423297 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B3galt1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1			Intron
				Noncoding-Transcript-Variant
Rr558222	regulatory region 558222			433 bp distal