rs33534700 SNP Detail

Summary

• ID
  rs33534700
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30803602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCATGATA TAATAAATTA
  GAATTCACTT TCTAATGTGA CTCTAGAGAC AAAGACTGCT CTGCTAGTGA CATCATGTCG
  GGCTAGTGAC ACCAATGTCA TTAGTAATGT TTATGTCAGG CAAGTATCCT TGGCCTGAAC
  CTATGGGAAA ATAGCCCAGA GTCCTACTGT AGTCGATAAG AACTGTCTCC CATGGGGAAT
  R
  GGGGTGGGGA GGCCTGGCAG ATGGTGTCCC TTTAGGACAC AGTTGTGTTT CATCTAGTCT
  CCAATGTCTC AGGAAACAGT TTTGGATAAA TTACTACTTC CTTTGAAATG ACACAAAACT
  AAAAGCACTG TGGGGGACAC ATAGCTCAGA AGTCACCTCT TGGATCTTTT ATCCCTGGTT
  TCACTGAAAA GAGCACACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45790706	mCV25292957	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	A
ss148186557	ENSMUSSNP6568562	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs33534700					SNP	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30803602 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	1475 bp proximal
D5Mit389	DNA Segment, Chr 5 Massachusetts Institute of Technology 389	930 bp proximal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Mir5625	microRNA 5625	1678 bp upstream
Rr609028	regulatory region 609028	1185 bp proximal
Slc35f6	solute carrier family 35, member F6	1675 bp upstream
Tssr45603	transcription start site region 45603	1663 bp upstream
Tssr45604	transcription start site region 45604	1677 bp upstream
Tssr45605	transcription start site region 45605	1747 bp upstream