rs33535025 SNP Detail

Summary

• ID
  rs33535025
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84492010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTATAGTAAA AAAAAAGTGG TAAAAAATCT TTTCTTTTTG TGCAGGTGAA CCCGTCCGAC
  ATTCAAATTC TCAAGCACGA ATGAAATACT TATCTGGTTG AGGAAGATTT AAGGCAAGTT
  CGGGCCCTAT GAAGGCACTG AGACCATTTC CCCCATTATT GCTACATGTC TCTATAATCA
  ATGTCACAGT AGAGCTGGTG GTTTATAAAG CTGGATGTAG AGAAGCAAGC CACACGTGAG
  CCTGACTGCA GTCTCACCTT TCTCTCTTTA AAGTTGGATG GGCTACAACC ATTATACATT
  Y
  TAAGAAAACC TCAAAATGTT CCTCAAACCA CTTCCACAGC ATCAAGATTG CATGGTTTCT
  TCATGCGATC TTTCGAAATT TACGTAAACA AGGAAAGAAA TTAATGAAAT AAATATTACA
  TACAATCTCT TAAATTAAGA TTTTTCTTAC TCATTTACAA TAAAATAACC AAGTGAAGTT
  ACAAAAGGCA TATATTACTG TGAAAAGAAC ACACTCCACA TTTTGCCGAT TAATAATGGC
  AATTATAATT TAACATAATA AAAGAATATA TATCTATTGC TTTCATCATA CTCGATAAAT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39547516	mCV23110564	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33535025					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84492010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	1016 bp proximal
Gm41640	predicted gene, 41640	1651 bp upstream
Gm64687	predicted gene, 64687	1611 bp downstream
Rr1582	regulatory region 1582	782 bp downstream
Rr532023	regulatory region 532023	1194 bp distal
Rr532024	regulatory region 532024	1572 bp distal
Rr532025	regulatory region 532025	427 bp distal
Rr532026	regulatory region 532026	683 bp proximal
Tssr146043	transcription start site region 146043	810 bp downstream
Tssr146044	transcription start site region 146044	1164 bp upstream
Tssr149649	transcription start site region 149649	990 bp upstream
Tssr149650	transcription start site region 149650	982 bp downstream
Tssr149651	transcription start site region 149651	1020 bp downstream
Tssr149652	transcription start site region 149652	1405 bp downstream
Tssr149653	transcription start site region 149653	1453 bp downstream
Tssr149654	transcription start site region 149654	1593 bp downstream
Tssr149655	transcription start site region 149655	1689 bp downstream
Tssr149656	transcription start site region 149656	1779 bp downstream
Tssr149657	transcription start site region 149657	1995 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates