rs33535804 SNP Detail

Summary

• ID
  rs33535804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19426729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATTTTT ATTCTGGTAA
  CATGGTGACA GTCTGAAATT TGAAACTTTA CAAGGCAGTA AAATATATTT GAACTGTCAG
  ATAATTTAGG CTAAGTAAAC CCTATACACA AATATGTAAT TAGGTGAATT ACTGCTATTG
  CTGTTGGAAT GTAACTCCTC ATCCAGTAAA AGCTAAAGGT GTGCCCCAAT TAATGTCTTT
  Y
  AAATATGTGA TGATGCTTGT ATAATTATGA TGCTGTAATT ATATTCACAT GGATTTGTGG
  TTCTTGGGAG GGAACACATA GCTGTAGAAG ATATACTGCT GCTGAAATGA TTTTCACTGT
  TTATTTATGA TACAGTATGT TTTACTCAGA CAGTGTTAAC AGTCAGATAA AGTGAACTGT
  TGATAGAATT GTTGAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	PWD/PhJ
ss46825291	NES10845116	PERLEGEN	MM_PANEL2	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	PWD/PhJ
rs33535804					SNP	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46825291	NES10845116	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19426729 () rs orientation: forward

Symbol	Name	Function Class
Gm42188	predicted gene, 42188	1614 bp upstream