rs33536245 SNP Detail

Summary

• ID
  rs33536245
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153472882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AATAAGTGAA ATTCAGCGAG GCATGGTAGT ACACTCCTGA AAACCTCTCA CTGGGGCCTC
  AGAGACACTG GCAAGTTCCA GGCTACCTGG ACCACAGAGT GAGACCTTAC ATCCAGGAAC
  AAATAAACCA GTCCCCAGCA GAGAGAATGA GGCAGGAGAA TCACAAACTT GTAGTCTAGG
  CTACATGGCT AAATTATTTA TTTATTTATT TATTTATTTA TTTATTTATT AAAGAGCTGA
  CTGAGCCTGT TGGCACAGGT ATATAAATTC AGGTCCTCAG GAGGTTGAGG AAGGAGGATT
  M
  TAAATTCAAG GCCAGACTGA GCAAATTATT GAGAATGGGA CTCAAACAAG GCCAGGCATA
  ATGAATGGTA CACGCCTAGA ATCCTAGCCT TGGAAGGCAG AGTGGAGGAT GGTTTTTAGT
  TCCATACCAG TCAGGGTTAC AAGACCTTAT CTAAAAATAA AAGAGAAAAC CACAACAGCA
  AGCCACCACA CAGAACCTAG TGGGGATTAA TAGATATCTG ACCACAGTGT CACACACCTG
  GAATCGCAGC ACTTGGGGAA GCTGAGGCAG GGAGAACTTA AATCTGAAGA CAGCCAGGGG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45290331	mCV23862287	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss147999425	ENSMUSSNP3106535	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33536245					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153472882 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Cpgi12491	CpG island 12491			1336 bp proximal
Rr567709	regulatory region 567709			506 bp distal
Rr567710	regulatory region 567710			1768 bp proximal
Tssr26915	transcription start site region 26915			1717 bp downstream
Tssr26916	transcription start site region 26916			1813 bp downstream