rs33536665 SNP Detail

Summary

• ID
  rs33536665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19427957 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGCCACA CCTCCTAATA
  GTGCCACTTC CTGGCCCAAG CATATACAAA CCATCACAAT CCTAGTCTGC ATTTATCTCC
  ACAGCAGTCT ATCGCCTTAA CCACGTGACC ACCTGTCCCA CTGACCTTGA TAGATAACAC
  ATATTTATGT GTTTTTTTTT TTTCCCTCAA CTACTGACAT TCTGGTAAGT GGAGAAGCAA
  R
  AAATAAGGAG AGAGGTCAAT AGAAGCAAGA CTGGCATGCT ACCTTGCTCC TTTCTGGGTT
  CTCTCACTTT CCTGCAGCGC CAAGAGAGTG TACGTCTCTT CCAAGTTACT GAGTTAGCTG
  TTCTGGAAGC TTCTGTGTAA TAACTATAAA TACTTAACCT GTGAAACAAA ATGGCTTTGT
  CTAAGTCCCT GAGGCATGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
ss46825303	NES10845012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ
rs33536665					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46825303	NES10845012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19427957 () rs orientation: forward

Symbol	Name	Function Class
Gm42188	predicted gene, 42188	386 bp upstream