rs33536667 SNP Detail

Summary

• ID
  rs33536667
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19428010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAATCCT AGTCTGCATT
  TATCTCCACA GCAGTCTATC GCCTTAACCA CGTGACCACC TGTCCCACTG ACCTTGATAG
  ATAACACATA TTTATGTGTT TTTTTTTTTT CCCTCAACTA CTGACATTCT GGTAAGTGGA
  GAAGCAAGAA ATAAGGAGAG AGGTCAATAG AAGCAAGACT GGCATGCTAC CTTGCTCCTT
  K
  CTGGGTTCTC TCACTTTCCT GCAGCGCCAA GAGAGTGTAC GTCTCTTCCA AGTTACTGAG
  TTAGCTGTTC TGGAAGCTTC TGTGTAATAA CTATAAATAC TTAACCTGTG AAACAAAATG
  GCTTTGTCTA AGTCCCTGAG GCATGGCTTC CTGGAAATAG ACTATTGCAT CTTCAGATGT
  TCTCATTTAA TTACACAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
ss46825306	NES10845015	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	G	T	T		G
ss134667475	ENSMUSSNP2295334	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320678657	CHEV_3_19273846	CHEVERUD	SCREENING_POP	f	SNP								T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	PWD/PhJ	SM/J
rs33536667					SNP	T	G	T	T	G	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46825306	NES10845015	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19428010 () rs orientation: forward

Symbol	Name	Function Class
Gm42188	predicted gene, 42188	333 bp upstream