rs33537255 SNP Detail

Summary

• ID
  rs33537255
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98177283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGACATTA AGAATTGTAT TTGAAGATGT TCCCTCACAC
  CCTGGGCCAA GTTTCTGGGA GCCAGATAAA TTGAACTTGC AAGGGTTAGC TGAAAGTCTC
  R
  CCTGCACACC ATGTGTGAAA GGGCCACCTT GAGACGTTTA AAATTCAACA TTTTGATTTC
  GGGAAAGATT TCCCATGAGA AGGGTTTTAG AACAGGGAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45791187	mCV25101754	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33537255					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98177283 () rs orientation: forward

Symbol	Name	Function Class
Antxr2	anthrax toxin receptor 2	within coordinates
Cpgi16083	CpG island 16083	952 bp proximal
Gm34226	predicted gene, 34226	1944 bp downstream
Gm42759	predicted gene 42759	1226 bp upstream
Rr615101	regulatory region 615101	1467 bp distal
Rr615102	regulatory region 615102	1101 bp distal
Rr615103	regulatory region 615103	1528 bp proximal
Tssr1554	transcription start site region 1554	1528 bp downstream
Tssr47433	transcription start site region 47433	1271 bp upstream
Tssr47434	transcription start site region 47434	1301 bp upstream
Tssr47435	transcription start site region 47435	1671 bp upstream
Tssr47436	transcription start site region 47436	1840 bp upstream
Tssr47437	transcription start site region 47437	1875 bp upstream
Tssr51988	transcription start site region 51988	1146 bp downstream
Tssr51989	transcription start site region 51989	1193 bp downstream
Tssr51990	transcription start site region 51990	1206 bp downstream
Tssr51991	transcription start site region 51991	1303 bp downstream
Tssr51992	transcription start site region 51992	1373 bp downstream
Tssr51993	transcription start site region 51993	1546 bp downstream
Tssr51994	transcription start site region 51994	1570 bp downstream
Tssr51995	transcription start site region 51995	1713 bp downstream
Tssr51996	transcription start site region 51996	1873 bp downstream
Tssr51997	transcription start site region 51997	1911 bp downstream
Tssr51998	transcription start site region 51998	1951 bp downstream
Tssr51999	transcription start site region 51999	1986 bp downstream