rs33538154 SNP Detail

Summary

• ID
  rs33538154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:107908000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAGT TTCTGCTGTG CATGCGTATT
  Y
  GCGTTTTAAG CAGAGCTGCC TGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46288295	mCV25258021	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145737543	ENSMUSSNP4955362	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss322827018	CHEV_8_109705268	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33538154					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:107908000 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cyb5b	cytochrome b5 type B			Intron
				Noncoding-Transcript-Variant
Rr669364	regulatory region 669364			1468 bp proximal
Tssr79292	transcription start site region 79292			1731 bp upstream