rs33538185 SNP Detail

Summary

• ID
  rs33538185
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31276419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCA AGCTACCTCG GGAGGTTTCC
  K
  AAACAAGGAC CCCGTGGTTT GTAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39547965	mCV24388989	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss145455230	ENSMUSSNP4186245	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss325358444	CHEV_17_31194390	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33538185					SNP	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss159831841	UOL_MMUSEQ_402	UOL_CGR	Mmu17_30637692_36837814	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31276419 () rs orientation: forward

Symbol	Name	Function Class
Abcg1	ATP binding cassette subfamily G member 1	249 bp upstream
Cpgi8940	CpG island 8940	within coordinates
Rr525355	regulatory region 525355	within coordinates
Rr525356	regulatory region 525356	293 bp proximal
Rr525357	regulatory region 525357	618 bp proximal
Rr525358	regulatory region 525358	818 bp proximal
Tssr143637	transcription start site region 143637	241 bp upstream
Tssr143638	transcription start site region 143638	259 bp upstream
Tssr143639	transcription start site region 143639	274 bp upstream
Tssr143640	transcription start site region 143640	295 bp upstream
Tssr143641	transcription start site region 143641	323 bp upstream