rs33538568 SNP Detail

Summary

• ID
  rs33538568
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114271046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC AGCTGGGCGT GCAGATCTGG
  S
  CAGAGACTGC ATGACCTCAG GCTTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45790824	mCV24685756	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C
ss149107138	ENSMUSSNP3317902	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		C
ss321651948	CHEV_5_114582994	CHEVERUD	SCREENING_POP	f	SNP					G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33538568					SNP	G	G	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114271046 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16310	CpG island 16310	1131 bp distal
Gm73235	predicted gene, 73235	within coordinates
Tssr48058	transcription start site region 48058	1807 bp downstream
Tssr48059	transcription start site region 48059	1765 bp downstream
Tssr48060	transcription start site region 48060	756 bp downstream
Tssr52696	transcription start site region 52696	1388 bp upstream
Ung	uracil DNA glycosylase	within coordinates