rs33539306 SNP Detail

Summary

• ID
  rs33539306
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57365283 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGG ACTCCAGCAG ACTGCACCCC
  S
  ACAGGGCGTG TGTGGGGAAG ACAGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39547897	mCV23459035	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
ss145809624	ENSMUSSNP2736115	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33539306					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57365283 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9390	CpG island 9390	891 bp proximal
Cpgi9391	CpG island 9391	1925 bp proximal
Rr405393	regulatory region 405393	1878 bp upstream
Rr529258	regulatory region 529258	1698 bp distal
Rr529259	regulatory region 529259	1082 bp distal
Rr529260	regulatory region 529260	332 bp proximal
Rr529261	regulatory region 529261	1570 bp proximal
Slc25a23	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	within coordinates
Tssr148875	transcription start site region 148875	1512 bp downstream