rs33539425 SNP Detail

Summary

• ID
  rs33539425
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:132657032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACCTTA AAACAATACT AGGTCGTTTT TTTGTTGGTT TTTTTTTTTT TTTTTGAGAC
  TGGATTTCTC TGTGTAGCCC ATCAAACAAA CTAATTAACA AAAAGAGTAC CTTTTAGAAC
  TAAAGATACA GTATGTCTCC TTGGTAACAA AAAGGATCAT CTAACAAAAC ACATTATAAA
  W
  AGGACATTCA AATGGTTGTA TCAGAACATG AAGCAAGCTG AGTGTGGTGA AGCAAACCTG
  TAATCCCACC ACTTGGGAGG CAGGAAAGTG TTTGCTTCAG CGGGCCATCA GCAAGCACCA
  GTATGTATAC TGGGCTTAAG CTGGCCATGT ACCTTGTAGT AAGTTCTCTT TTCTTACAGT
  AGACAGATTT TTCCCACTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45290664	mCV23920743	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss147623029	ENSMUSSNP7039059	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A				A
ss320509822	CHEV_2_132640848	CHEVERUD	SCREENING_POP	f	SNP						T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33539425					SNP	T	T	A	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:132657032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12310	CpG island 12310	514 bp proximal
Mcm8	minichromosome maintenance 8 homologous recombination repair factor	1029 bp upstream
Rr397334	regulatory region 397334	826 bp upstream
Rr565537	regulatory region 565537	932 bp proximal
Rr565538	regulatory region 565538	1040 bp proximal
Trmt6	tRNA methyltransferase 6	within coordinates
Tssr20335	transcription start site region 20335	1025 bp upstream
Tssr20336	transcription start site region 20336	1036 bp upstream
Tssr20337	transcription start site region 20337	1057 bp upstream
Tssr26490	transcription start site region 26490	866 bp downstream