rs33539922 SNP Detail

Summary

• ID
  rs33539922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:5892983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCTTTGATTA TGTCACCTTT ACAAACAGCG TGCCTTTTCC AGATTTATTT TTGACACGTC
  TAAGCTACTT CTGGCTTGAT GAAAACTTTT TTTTTTTTTT AAAGATGGGT GTTTATAGAA
  GGTATAGGAA AGTGTTAAGG AATTTGGAAG GTCAGAAGTG CCTGATTTCA TTTAGTCTGT
  TGAAGTTGGG GCCCAGAAAA ATTCATTTTC TCTGTCCTGA CTCTGTCTAG GTGTAGTGTT
  TATATGTAAA TGAAGCTTCT TCAGAAACCT ACTGCTACTG TTGAAATAAT TGCCTTGTTA
  R
  TAGTATATCT GAGCAGTTGT TGCTTGGTTT TCCTAGATAT AAGACAACTA CCTACCTTTC
  AATATACTTA TATTGTGACA AACTTTGTTG GAGATGAAAC CTAATTTAAG CAGAGGATTT
  TTGAGGTTTG TTGCCTAGAC ATTTCAGAAA TTGAAAATTC AATTACAGAG TTATCTTGCA
  ACATTGACAA TGATTTGTGA CATAGACCCT ATTCTGTAAT ATTTGTACTG ATCTGAGGCA
  TGCATGCCTA CTTCAGCTTA GCAAGTAATG CATATATCCA AGCAGAGGAA AAAGTTTTAT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39548651	mCV23836996	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33539922					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:5892983 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8560	CpG island 8560	1564 bp distal
Cpgi8561	CpG island 8561	741 bp distal
Gm65471	predicted gene, 65471	842 bp upstream
Rr521222	regulatory region 521222	1369 bp distal
Rr521223	regulatory region 521223	853 bp distal
Rr521224	regulatory region 521224	352 bp distal
Rr521225	regulatory region 521225	230 bp proximal
Snx9	sorting nexin 9	within coordinates
Tssr142439	transcription start site region 142439	1437 bp downstream
Tssr142440	transcription start site region 142440	1331 bp downstream
Tssr142441	transcription start site region 142441	1298 bp downstream
Tssr142442	transcription start site region 142442	1245 bp downstream