rs33541514 SNP Detail

Summary

• ID
  rs33541514
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:100053778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTTACAGAAC AACTCAGAGA TGGTCTTCAT GCTCACAAAA CCAAATGCAG GCTGTGCACA
  AGAGGTTCCT CCAATGCTTG CTTAAATTTA AGTGTGCTGC ATGCGTGCAT GGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG ATGTGCGTGC ACATGTAGAT
  GTGTCTTCCA AGGTTGCGCT CCACATTTTT TGAAACCAAG ACTCACCAGA CCTAAAGCTT
  ATCAATTCAG GTAGGCCAAT GAGCTACTAG GATACACCTG TCTCCACCAC CACTCCACTT
  Y
  TCAAAGGGGA TTACATGCTC CAACCACCAT GCCTTTTTTA CTTCTTTTTT TTTTTTTTTT
  TTTTTTTTTT AGCGTGAGTT CTGGGGATTC GAACTCAGAC CTCCGGGGTC TTTGCCTACT
  ACCCCCAGCT TCGCAGCCCT AGATTGTGAC TGATTCACAC GTAGATGAGG CCTGGGCAGT
  TAAACAGCTC TTAAATGGTT TTCCAGACTA CCCGGAGCAC AGAGAGACCT CAGGAATCCC
  AAGCATGTGC GAGGACCTCG CCTAGCAAAC TCACAGGCTC TGCGGGACCC ACAGATGGCC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45791709	mCV24433598	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs33541514					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:100053778 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16101	CpG island 16101	129 bp proximal
Gm73319	predicted gene, 73319	within coordinates
Rr399185	regulatory region 399185	272 bp upstream
Rr615358	regulatory region 615358	within coordinates
Rr615359	regulatory region 615359	358 bp proximal
Rr615360	regulatory region 615360	408 bp proximal
Rr615361	regulatory region 615361	1128 bp proximal
Tssr47471	transcription start site region 47471	335 bp upstream
Vamp9	vesicle-associated membrane protein 9	335 bp upstream