rs33541707 SNP Detail

Summary

• ID
  rs33541707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:82273219 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTT TTACTTGTAT GTGTATTAAA
  Y
  CCCCATTGTA GAAGGAAAAC AGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45791513	mCV24340407	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss61190083	NES16699775	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	T	C	T	C	T	C	C
ss148747197	ENSMUSSNP2793923	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33541707					SNP	T	T	C	C	C	C	C	C	C	T	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61190083	NES16699775	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:82273219 () rs orientation: forward

Symbol	Name	Function Class
1700031L13Rik	RIKEN cDNA 1700031L13 gene	659 bp upstream
Tssr51488	transcription start site region 51488	1999 bp upstream
Tssr51489	transcription start site region 51489	717 bp upstream
Tssr51490	transcription start site region 51490	700 bp upstream
Tssr51491	transcription start site region 51491	675 bp upstream
Tssr51492	transcription start site region 51492	649 bp upstream
Tssr51493	transcription start site region 51493	632 bp upstream