rs33541994 SNP Detail

Summary

• ID
  rs33541994
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:134487426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTA GGAGGAAAAA AAGACTAGCT
  S
  TGTTTCAATA CAGCTGATGT TAAAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45291138	mCV25095768	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33541994					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134487426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12319	CpG island 12319	1146 bp distal
Rr55684	regulatory region 55684	825 bp distal
Rr397337	regulatory region 397337	1153 bp downstream
Tmx4	thioredoxin-related transmembrane protein 4	1385 bp upstream
Tssr26507	transcription start site region 26507	1464 bp upstream
Tssr26508	transcription start site region 26508	1448 bp upstream
Tssr26509	transcription start site region 26509	1397 bp upstream
Tssr26510	transcription start site region 26510	1363 bp upstream
Tssr26511	transcription start site region 26511	1340 bp upstream
Tssr26512	transcription start site region 26512	1318 bp upstream