rs33542392 SNP Detail

Summary

• ID
  rs33542392
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:87785316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTACATGAAG TATCTTGTTT GTTTCCAGTT TCTGGCTATT TGGAATAAAC CTGTTATGAA
  AATAGTAGAG AATTTACCCT TGGGGTATGG TGGAGTATCT TTTGGGCTTA TACCCAGGAG
  TCATATGGCT GGGTCTTTAG GTATAACTAT TTCCAATTTT GTGAGAAAGC AACATATTGA
  TTGCCAGACA ATTTCCTGAA TAGAACACCA ATGACTGAGG TTTTAAGATA AACAATTGAT
  AAATGAAATT TCATGAAACT GAAAAACTTC TGTGAGACAA AGGACACTGT CCATAGGGGA
  R
  AAAAAATCAG CCCACAGTTT GGAAAGTAAC TTCATCAACC CTGTTGCCTA CAGAGAGCTA
  ATAGCGAAAA TATATAAAGA AATCATGTAG ACTCCAACAA ACCAAATAAG CCCCCAAACA
  ATGGGGTACA GAGCTAAACA GAATTAGCAA CAGAGTAATC TTATTGGCCA AGAAGCACCT
  AAATGAATAT TCAACATTCC TAGTAATCAG GGAAAAATGC AAATCAAAAT GACCATGAGA
  TTCTATCTTA CACCAATCAG AAGTCTAAGA TAAAAAACTT AAGCACATGC TATCAGGGAT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45291061	mCV25336271	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss146890015	ENSMUSSNP3213156	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33542392					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:87785316 () rs orientation: forward

Symbol	Name	Function Class
Rr373500	regulatory region 373500	1550 bp upstream