rs33542437 SNP Detail

Summary

• ID
  rs33542437
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89313641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTCCCT ACACTCTTGG
  CCTGAGTTTA AAGTGTAGTA CTCTACATAT TGCTCGGCAC AAGAAGGGGA ATGCAGGTCA
  GCTCCCCCAA AGTGTCCCAA AGTGAGTAAC TTCCCTCTGC GTTGTACTCG CCAACCTTCC
  TCCTGCACAT GCTCTGTCCG CCCGTCTCTC TTCCAGCGAG TCTGCATTTC TTTTCTCCAC
  K
  GATGTAAAGC TTTTCTTAGT TTTGCCAGGT TGTTATGATT TATTCCTTTT TAAAGATGCC
  ATCTCTTTCT ATCATATCTA GGCATGTGGA AAAGGAGTAG GAAGTAGGTG CCTGTATTTA
  GCTTGTCATT TTGATACACT ATCCTTTTCA AGGCAATTTT CAAAATATTA TGCTGCCTCC
  CCCAAAATCC ATTTATAGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48325883	NES12197709	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33542437					SNP	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48325883	NES12197709	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89313641 () rs orientation: forward

Symbol	Name	Function Class
Rr319439	regulatory region 319439	760 bp proximal
Rr324507	regulatory region 324507	983 bp proximal