rs33542441 SNP Detail

Summary

• ID
  rs33542441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:89312833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATACTGA TAGCCACATC
  ACCTAATGTC AAGATGGGTC TGAGAAAGAT GAAGAGCATC CAGTGAATTT GGCAAGGTGC
  GGATATCTAG TGAAGGGGGA GGGAGGTGGT AGAAGAGGAG GAGGAACAGG AGTGGCACAG
  GGAGGAGGGA GAAGTTTCAT CCTAGTGAAA ACAAAAACAA AAACAGAAAA TTAGTCAATG
  R
  TGGAATAGAC TGCAGGATGC TGAATTCTGC CAGCAATGGT ATTGGCTTCA CAGTGAATGA
  AACTGTGAGT CCGTGGCCCC AGGAGATACC CTGCTGCAAA GTATAGAGCA TATAGCAAAG
  TCATTCCCAG ACTCTTGACC CGATAGAAAC TGAGAAAATA AATGGGTGCT ATTTTTACAC
  TGGTAATTGA TACTGGTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48325887	NES12197740	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33542441					SNP	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48325887	NES12197740	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:89312833 () rs orientation: forward

Symbol	Name	Function Class
Rr319439	regulatory region 319439	1568 bp proximal
Rr324507	regulatory region 324507	1791 bp proximal