rs33543808 SNP Detail

Summary

• ID
  rs33543808
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:75149297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCCTTTTCCT GTGCTCTGGT TAACCTGGGC ACCACAACTG GATCCTTTCA TCACAACCAC
  TTCACTTTAA CTGACCTCTC TAAAGTTTAT TTCCTTCAAA GGTACAATGA AAATAATACA
  ATAATGCTTA CCCATCACAT CATGCAGACA TGAGTAAGTC TACTCATGCA AAATAATTGT
  TATCTCTTTT CATTTTATTG TCTCATTTTT AATCCTATGT CTCTCCTTAC CCATTATTTT
  TTCTTCTAAT CCCCATCCTC CCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  W
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACATTTGT GAATCTATGA
  CTTGAAAACT TCTGCCAAAT TTACTCAAGT CATCTTCCTT GGGTCTTGCA TGGGGTTGTT
  TGTGGTACCA ATTCTGTAAA AGCTACCTAC CCCTGAGCTA TATTAATCAT CACAGCTACT
  GGTAACAGTT AATGTCTTCC GACTGCTTAA TATAAGCCAG GCGGTACGCT AAGTATCATC
  AGCTTGTTAA ATTTTCACAA GCATATGAGG CAAGTACTAT TTTCATCTTC ATCTTAAGGG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45290963	mCV24296208	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33543808					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75149297 () rs orientation: forward

Symbol	Name	Function Class
2600014E21Rik	RIKEN cDNA 2600014E21 gene	1133 bp downstream
Gm39857	predicted gene, 39857	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559466	regulatory region 559466	543 bp distal