rs33543910 SNP Detail

Summary

• ID
  rs33543910
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144036733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAGTCGG CCCAGGGCTG
  GGCTAGGTCG GGGCTGTGGA TGCTCAGTTA TTTGTGGGAT TGGGGTGAAG CCATCGATGA
  AGTCATACAT ATTCCAGGTG TGTCTTGACG AATGAAAGGA TGCGCATCTG CCAGGTGAAC
  AAGAGGGGGC AGGAAGGGCT GGCTGTCTTG GCAGAGGAGC TGGCTTGAGC TCACTGCTAC
  R
  TCAGTAAGTG AAGTCAGAAA CATTCTGTGC TTGATCAATT AAAATTTTTA AAAATTTCAA
  CGTTTCCTCA AGAGCTTATC TGATATGAGG GTCAGCCTAA GAAGAAGAGG CTAAGAAAGT
  TCTGATAAGT GAAAATGAAG AAAGTAAAAC CGGGGATAAA ATACCGAGAA CCATGTTGGT
  AAAAATTAGA AAAGAAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45791545	mCV23378509	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss144607479	ENSMUSSNP3217621	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss321709183	CHEV_5_144860784	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33543910					SNP	A	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144036733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17002	CpG island 17002	261 bp proximal
Gm71407	predicted gene, 71407	1710 bp downstream
Gm71412	predicted gene, 71412	within coordinates
Lmtk2	lemur tyrosine kinase 2	521 bp upstream
Rr111125	regulatory region 111125	within coordinates
Rr124743	regulatory region 124743	within coordinates
Rr399492	regulatory region 399492	89 bp upstream
Tssr49686	transcription start site region 49686	438 bp upstream
Tssr49687	transcription start site region 49687	472 bp upstream