rs33544182 SNP Detail

Summary

• ID
  rs33544182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34615310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTGTGTGT GTGTGTTGGG GGGCAGATGG AACATGCTCT
  TTGCTAATAA ATGGAACGGG AATTTGGAAA GCTGGAGAGA GGAGAAGCCA ATGGGTTGGT
  Y
  ACGGTTGTAG GCCCTATCCG AGAAGTTTTG GAATCTGTAC CTACACAGAC TGAAAGGGAG
  TCGCCCTATA AGTTTATTGG GTGAGAACTG AAACTGGAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46288938	mCV24537503	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss60592087	NES16319608	PERLEGEN	MM_PANEL2	f	SNP	C			T	T	C	T		C		C	C		C	C	C	C		C
ss149094972	ENSMUSSNP5492846	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss322575464	CHEV_8_35211210	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33544182					SNP	C	T	T	T	T	C	T	C	C	T	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592087	NES16319608	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34615310 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	961 bp distal
Leprotl1	leptin receptor overlapping transcript-like 1	1417 bp upstream
Rr661963	regulatory region 661963	1134 bp distal
Rr661964	regulatory region 661964	633 bp distal
Rr661965	regulatory region 661965	976 bp proximal
Tssr76862	transcription start site region 76862	1819 bp downstream
Tssr76863	transcription start site region 76863	1789 bp downstream
Tssr76864	transcription start site region 76864	1772 bp downstream
Tssr80896	transcription start site region 80896	1995 bp upstream
Tssr80897	transcription start site region 80897	1569 bp upstream
Tssr80898	transcription start site region 80898	1438 bp upstream
Tssr80899	transcription start site region 80899	1404 bp upstream
Tssr80900	transcription start site region 80900	1388 bp upstream
Tssr80901	transcription start site region 80901	1346 bp upstream
Tssr80902	transcription start site region 80902	1143 bp upstream
Tssr80903	transcription start site region 80903	1090 bp upstream