rs33544770 SNP Detail

Summary

• ID
  rs33544770
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:128814087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGAGAGA CCTGGCTCAC
  TTACCTGGTG GGCTCTGAGA CCACCTTTGA GACCAAGTTA TGGGGTCTTT TCTTGCTCAA
  GTATCCAAAT TCCATATGGG AGTTCGAAAG ACTCAATTCA AGGAAAGGCA ATCCTTCTTG
  GAGTTGACAC TCTGAGAAGG AGAACCAGAA GATCACAAAA TAGTGAGGTG GTCTTAGCAT
  M
  GTAAAGTCAG TTGGGAGGTG TTGGAGAAAC TGGCCCTCTA GTTTGGGAAC ATGGCTTCTT
  CCTAGATAGG AATTTGAGGG CCCCAGATGT GATGGGCTGG AGTGGGGAGC CTTTGAAATG
  GTAGATGATT GGCACCGTGA ATTATTACCA TCTTTTATGG TCCTCTCACT GCAAGATCTG
  ATGCTAGCCA GAGCAGTATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45792008	mCV23759945	ABI	CRAMUS_MOUSE	f	SNP		C	A					A		A
ss51843703	NES14705163	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A		C	A	A	C		A	C		C
ss149244954	ENSMUSSNP3701761	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
ss321688015	CHEV_5_129242898	CHEVERUD	SCREENING_POP	f	SNP													A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33544770					SNP	C	C	A	A	A	A	A	A	C	A	A	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51843703	NES14705163	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:128814087 () rs orientation: forward

Symbol	Name	Function Class
4930553I04Rik	RIKEN cDNA 4930553I04 gene	994 bp upstream
Cpgi16665	CpG island 16665	621 bp distal
Gm71554	predicted gene, 71554	962 bp upstream
Piwil1	piwi-like RNA-mediated gene silencing 1	within coordinates
Tssr1644	transcription start site region 1644	862 bp downstream
Tssr48983	transcription start site region 48983	930 bp downstream
Tssr48984	transcription start site region 48984	891 bp downstream
Tssr48985	transcription start site region 48985	836 bp downstream
Tssr48986	transcription start site region 48986	776 bp downstream
Tssr53471	transcription start site region 53471	1005 bp upstream