rs33546455 SNP Detail

Summary

• ID
  rs33546455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74368047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA AGAGCTGTCA GCCATGAGAC
  Y
  TCAGCTGCAC TGCTGGCTGC TGGGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45791476	mCV23193210	ABI	CRAMUS_MOUSE	f	SNP	T	T					C		T
ss61181206	NES16695027	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	T		T	T	C		C		C	C		C
ss148664274	ENSMUSSNP977523	ENSEMBL	ENSEMBL_Sanger	f	SNP									T				T
ss321569536	CHEV_5_74603411	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33546455					SNP	T	T	C	C	C	T	C	T	T	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61181206	NES16695027	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74368047 () rs orientation: forward

Symbol	Name	Function Class
Rr613253	regulatory region 613253	340 bp distal
Rr613254	regulatory region 613254	994 bp proximal
Scfd2	Sec1 family domain containing 2	within coordinates