rs33546799 SNP Detail

Summary

• ID
  rs33546799
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103683708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTTATAA TAAATAAATA
  AATCTTAAAG AAACAAAAAC AGATAGTAAA TATACTAATC CAAATACTCA GACAGATCTC
  TGTGATCTGT GAGTTCAAGT CTAGCCTGGT CTATACAGAA AGTTCCAGGC TAGACAGTCA
  GACCTTGTCC CCCAAAAAAG ATACCTCCCT CAAAGGAAAA AAAAGAAAAC ATATTTTGTG
  K
  TTAACTACTT ATTTTTGGTG GAGGTTTTTA TTTTGGGATA GGGTGCATTA AAGTCAGCCT
  CACACAGGTT AGGCAAGCCC TGTATCTCTG AGCTACGTAC CCCAGCCCAT GCTCATTTCT
  TGATTGGACA CCTGTATAAT CAATATTCAA TTTATATATA TTAAATTAGG TATCAGATTC
  TTTAAGATTA ATAACTAGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46826963	NES10716951	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33546799					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46826963	NES10716951	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103683708 () rs orientation: forward

Symbol	Name	Function Class
Gm15886	predicted gene 15886	within coordinates
Hipk1	homeodomain interacting protein kinase 1	within coordinates
Rr69881	regulatory region 69881	308 bp distal
Rr69882	regulatory region 69882	893 bp proximal
Rr367513	regulatory region 367513	1607 bp upstream
Tssr34850	transcription start site region 34850	417 bp downstream
Tssr34851	transcription start site region 34851	1743 bp downstream
Tssr34852	transcription start site region 34852	1764 bp downstream
Tssr34853	transcription start site region 34853	1796 bp downstream
Tssr34854	transcription start site region 34854	1865 bp downstream
Tssr34855	transcription start site region 34855	1917 bp downstream