rs33547128 SNP Detail

Summary

• ID
  rs33547128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142945754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTA AACCTGGTCC TTCCCATCGA
  Y
  TGGGTTTGGG GGTAGGGGTG TTTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss45792301	mCV23387280	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss144594679	ENSMUSSNP4906433	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33547128					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142945754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16967	CpG island 16967	within coordinates
Cpgi16968	CpG island 16968	1800 bp proximal
Fscn1	fascin actin-bundling protein 1	356 bp upstream
Rr378736	regulatory region 378736	198 bp upstream
Rr624074	regulatory region 624074	within coordinates
Rr624075	regulatory region 624075	1825 bp proximal
Tssr49613	transcription start site region 49613	349 bp upstream
Tssr49614	transcription start site region 49614	478 bp upstream
Tssr49615	transcription start site region 49615	959 bp upstream
Tssr49616	transcription start site region 49616	1001 bp upstream
Tssr49617	transcription start site region 49617	1189 bp upstream