rs33547845 SNP Detail

Summary

• ID
  rs33547845
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23897093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGATGTTG GCATTCTCCG GTATCAGTAA ACAGTACTGC
  AAGCATATAT AGAAATGCTA CTTTCTTTTT TGAAAGATAC CTTTTATTTG TGTGTGTGTG
  M
  CACATATGTT TGAGTGTCTC TGGAGTCCAG AGAAGGGCAA CGGATCTCCT GGCAATCGAA
  TTTCAAGTGG TTATAAGCTG GGAGCAAAAA AAAAAAAAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39549241	mCV24340438	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss145330340	ENSMUSSNP5496813	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325326760	CHEV_17_23815086	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33547845					SNP	C	C	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23897093 () rs orientation: forward

Symbol	Name	Function Class
Cldn6	claudin 6	1252 bp upstream
Cpgi8683	CpG island 8683	491 bp distal
Cpgi8684	CpG island 8684	1173 bp proximal
Rr523106	regulatory region 523106	1834 bp distal
Rr523107	regulatory region 523107	161 bp distal
Rr523108	regulatory region 523108	797 bp proximal
Rr523109	regulatory region 523109	1551 bp proximal
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	670 bp upstream
Tssr142943	transcription start site region 142943	1244 bp upstream
Tssr142944	transcription start site region 142944	1553 bp upstream
Tssr142945	transcription start site region 142945	1618 bp upstream
Tssr146639	transcription start site region 146639	1536 bp upstream
Tssr146640	transcription start site region 146640	1490 bp upstream
Tssr146641	transcription start site region 146641	1473 bp upstream
Tssr146642	transcription start site region 146642	1435 bp upstream
Tssr146643	transcription start site region 146643	663 bp upstream
Tssr146644	transcription start site region 146644	635 bp upstream