About   Help   FAQ
rs33548050 SNP Detail
Summary
  • ID
    rs33548050
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr5:115105439 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CCAGTGAATT TCAAAGGCTG GCATGCGAAA GAATTTCCCA
    TCAAGCCAAG CAGTAAGAAT GTCTGGGGGT GCGGTAGTAA ACATGCCGAG ATAACATGGA
    M
    CTCGAGAGCA CTGTGCAGAC ATAGATGAAG CCATCACACA CATCCAAGTC TGGTCTTACT
    ACTTAAGGAT GTCCCTTTGC TTCACTGAGC CTTCCTCTG                       
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
LG/J
SM/J
ss45792316 mCV24915793 ABI CRAMUS_MOUSE f SNP A C C
ss321653983 CHEV_5_115417389 CHEVERUD SCREENING_POP f SNP A C
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
LG/J
SM/J
rs33548050 SNP A C C A C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:115105439 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm71622 predicted gene, 71622 within coordinates
Hnf1a HNF1 homeobox A Intron
Hnf1aos1 HNF1 homeobox A, opposite strand 1 1363 bp upstream
Hnf1aos2 HNF1 homeobox A, opposite strand 2 1443 bp upstream
Rr124128 regulatory region 124128 561 bp proximal
Rr618076 regulatory region 618076 1350 bp distal
Rr618077 regulatory region 618077 1814 bp distal
Rr618078 regulatory region 618078 772 bp distal
Rr618079 regulatory region 618079 636 bp distal
Rr618080 regulatory region 618080 172 bp proximal
Rr618081 regulatory region 618081 953 bp proximal
Tssr48194 transcription start site region 48194 1379 bp upstream
Tssr48195 transcription start site region 48195 1409 bp upstream
Tssr48196 transcription start site region 48196 1448 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
07/22/2025
MGI 6.24
The Jackson Laboratory