rs33549311 SNP Detail

Summary

• ID
  rs33549311
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103685933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAAGTCA CACATATAGT
  GTCCATACTG TGCCAAAGCA AAGGCTAACT ACTCTGTACA AGTCAAACAT AAAATAGTGT
  TCTATTCTCT AACACTGGAA ATGATTGCCA CTGACCAAAA GAAATCAACC AGCTGATGAC
  CAGGGTAGAG TATCTTCTGA AGAAGTTACT CTACAGAAAG TTACTCTTAG AACAAGACAC
  R
  ATCAGGTGGT GGCGTAGCTC AGTGCTTTGC GGACAATCCC AACAACCTGA GTTTTCTTCC
  CAGACACTTA TGGTGGAAGG AGACAGGTGA TCCCAGCAGT TGTCCTATGT CCTCCACAGC
  CTTCCCACAG TCTTCCCATG ACATACTTAT CACATCCGTG AAATCATGCT GGACTACATT
  GGGGGTTGGG GGAGGGAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46826996	NES10716914	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33549311					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46826996	NES10716914	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103685933 () rs orientation: forward

Symbol	Name	Function Class
Gm15886	predicted gene 15886	1392 bp downstream
Hipk1	homeodomain interacting protein kinase 1	within coordinates
Rr69882	regulatory region 69882	1133 bp distal
Rr367513	regulatory region 367513	352 bp downstream
Tssr34850	transcription start site region 34850	1806 bp upstream
Tssr34851	transcription start site region 34851	466 bp upstream
Tssr34852	transcription start site region 34852	440 bp upstream
Tssr34853	transcription start site region 34853	416 bp upstream
Tssr34854	transcription start site region 34854	340 bp upstream
Tssr34855	transcription start site region 34855	291 bp upstream