rs33549579 SNP Detail

Summary

• ID
  rs33549579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164753797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGG AGGCGCCCGG CTCTCGTGGG
  Y
  GTGGCCCCCA GCGTCTAGCC ACACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45291935	mCV23132992	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss148232912	ENSMUSSNP6025395	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320607084	CHEV_2_164737377	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33549579					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164753797 () rs orientation: forward

Symbol	Name	Function Class
2210414I22Rik	RIKEN cDNA 2210414I22 gene	13 bp upstream
Cpgi12677	CpG island 12677	within coordinates
Rr367365	regulatory region 367365	within coordinates
Rr569760	regulatory region 569760	1761 bp distal
Rr569761	regulatory region 569761	483 bp distal
Rr569762	regulatory region 569762	528 bp distal
Rr569763	regulatory region 569763	131 bp distal
Rr569764	regulatory region 569764	147 bp distal
Rr569765	regulatory region 569765	within coordinates
Rr569766	regulatory region 569766	20 bp proximal
Rr569767	regulatory region 569767	1242 bp proximal
Tssr21686	transcription start site region 21686	422 bp downstream
Tssr27593	transcription start site region 27593	667 bp upstream
Tssr27594	transcription start site region 27594	638 bp upstream
Tssr27595	transcription start site region 27595	578 bp upstream
Tssr27596	transcription start site region 27596	294 bp upstream
Tssr27597	transcription start site region 27597	269 bp upstream
Zfp335	zinc finger protein 335	mRNA-UTR
Zfp335os	zinc finger protein 335, opposite strand	within coordinates