rs33550134 SNP Detail

Summary

• ID
  rs33550134
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103686304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTACATT GGGGGTTGGG
  GGAGGGAAGA GAAAGAGGGA GAGAGAACTG TAAAGAACGT AAAGAAGATA TGGGGAGAGG
  AAGTGAGAAC AGTCCAACTG CCCTGAGTAT CCTACGGATC CCTCAAGCTC AGTAAGCCCA
  AGACTACACT CGAAGCTGTT TTGTTTAAAG AATAGAGCCC AAACACCCAG CCCTAGCACA
  Y
  ATTCATCGGT TCTCAGATTG CCATCAGGAC TTCAGAGGCC TTGAAGCTCG ACAGTTAACC
  CCTTTTCTAG ACCTATACTT TCCCTCTTTG CAGTAATTAT AACCTAGTAT GTCCCTTGCA
  AAAAAAGAGA AAAAAAATCT AAAAAATTCT ATCTCAAATC CAGACTCCTC TTCTCGACTC
  CTCTTTCTAC TCTTATCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46826999	NES10716829	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33550134					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46826999	NES10716829	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103686304 () rs orientation: forward

Symbol	Name	Function Class
Gm15886	predicted gene 15886	1763 bp downstream
Hipk1	homeodomain interacting protein kinase 1	within coordinates
Rr69882	regulatory region 69882	1504 bp distal
Rr367513	regulatory region 367513	723 bp downstream
Tssr34851	transcription start site region 34851	837 bp upstream
Tssr34852	transcription start site region 34852	811 bp upstream
Tssr34853	transcription start site region 34853	787 bp upstream
Tssr34854	transcription start site region 34854	711 bp upstream
Tssr34855	transcription start site region 34855	662 bp upstream