rs33550169 SNP Detail

Summary

• ID
  rs33550169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115051287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAT ACCAAAAAAA TCTCACAGAC
  R
  ATGCCATCTG GCTATTTTCA CAGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45792170	mCV24698226	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss149118862	ENSMUSSNP493640	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss321653770	CHEV_5_115363236	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33550169					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115051287 () rs orientation: forward

Symbol	Name	Function Class
Oasl2	2'-5' oligoadenylate synthetase-like 2	992 bp downstream
Tssr48141	transcription start site region 48141	1953 bp downstream
Tssr48142	transcription start site region 48142	1863 bp downstream
Tssr48143	transcription start site region 48143	1820 bp downstream
Tssr48144	transcription start site region 48144	1780 bp downstream
Tssr48145	transcription start site region 48145	1713 bp downstream
Tssr48146	transcription start site region 48146	1647 bp downstream
Tssr48147	transcription start site region 48147	1632 bp downstream
Tssr48148	transcription start site region 48148	1566 bp downstream
Tssr48149	transcription start site region 48149	1546 bp downstream
Tssr48150	transcription start site region 48150	1533 bp downstream
Tssr48151	transcription start site region 48151	1491 bp downstream
Tssr48152	transcription start site region 48152	1433 bp downstream
Tssr48153	transcription start site region 48153	1343 bp downstream
Tssr48154	transcription start site region 48154	1327 bp downstream