rs33550430 SNP Detail

Summary

• ID
  rs33550430
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47746298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGTTATC CATACAGGCT
  CAGGCCAATG AGATCAGTCA ACTTTCTGAT AGGCAGCACT AACTAGACCC AGTAGATTTA
  AAGGGGGGCG GGGAGGGATG ATGAAGAGGA GAAAGGGATG GGAGGGAAGA GTGGGAGAGG
  GATAGCCTGC ATGATATGCT CAAGACACAT TGTTTATGTA TGAAATTGCC AAAGACTAAA
  Y
  TTTATTTCAT GAAATATACA TTAAGATCGG GCTTGGTGGT CTGAGCATTT AATCCCAGCA
  CTTGGGAGAC AGAGTTGAGA TAGTCATAAG TTCAAGTCCA GCCTGGTCTA CAAATTTCAG
  GACAGCAATG GCTACATAAT AGACAGACCC TGCCATACAT AGATAGATAG ATAGATAGAT
  AGATGCATAC ATACATACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39549118	mCV25219135	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss145706710	ENSMUSSNP371659	ENSEMBL	ENSEMBL_Sanger	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33550430					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47746298 () rs orientation: forward

Symbol	Name	Function Class
AI661453	expressed sequence AI661453	1266 bp upstream
Cimip3	ciliary microtubule inner protein 3	within coordinates
Cpgi9259	CpG island 9259	821 bp proximal
Rr339933	regulatory region 339933	902 bp proximal
Tssr144911	transcription start site region 144911	1212 bp upstream
Tssr144912	transcription start site region 144912	1228 bp upstream
Tssr144913	transcription start site region 144913	1243 bp upstream
Tssr144914	transcription start site region 144914	1274 bp upstream
Tssr144915	transcription start site region 144915	1358 bp upstream
Tssr148435	transcription start site region 148435	1943 bp upstream
Tssr148436	transcription start site region 148436	1917 bp upstream
Tssr148437	transcription start site region 148437	1847 bp downstream
Tssr148438	transcription start site region 148438	1992 bp downstream